Stem-loop sequence hsa-mir-3180-1

Accession MI0014214
Description Homo sapiens miR-3180-1 stem-loop
Gene family MIPF0000894; mir-3180
Stem-loop 
cagu   ac      a      a  c              ----------  c 
    gcg  gggcgg gcuucc ga gcuccgccccacgu          cg a
    |||  |||||| |||||| || ||||||||||||||          ||  
    cgu  cccgcc cggagg cu cgaggcggggugcg          gc u
--gu   --      c      c  u              aaagggcccc  g
Get sequence
Deep sequencing
2966 reads, 13 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 15005077-15005170 [+]
sense
ENST00000432470 ; NPIP-201; intron 3
ENST00000413283 ; RP11-719K4.1-201; intron 8
antisense
OTTHUMT00000409540 ; RP11-680G24.3-001; exon 1
OTTHUMT00000409540 ; RP11-680G24.3-001; exon 1
OTTHUMT00000409540 ; MIR3180-1-001; exon 1
ENST00000548268 ; RP11-680G24.3-001; exon 1
ENST00000548268 ; MIR3180-3-001; exon 1
ENST00000548268 ; MIR3180-1-001; exon 1
Clustered miRNAs
< 10kb from hsa-mir-3180-1
hsa-mir-3179-1 chr16: 14995365-14995448 [+]
hsa-mir-3670-1 chr16: 15001574-15001638 [+]
hsa-mir-3180-1 chr16: 15005077-15005170 [+]
Database links

Mature sequence hsa-miR-3180-5p

Accession MIMAT0015057
Sequence

18 -  

cuuccagacgcuccgccccacgucg

 - 42

Get sequence
Deep sequencing 681 reads, 5 experiments
Evidence experimental; Solexa [1,3]
Predicted targets

Mature sequence hsa-miR-3180-3p

Accession MIMAT0015058
Sequence

62 -  

uggggcggagcuuccggaggcc

 - 83

Get sequence
Deep sequencing 8213 reads, 12 experiments
Evidence experimental; Solexa [1-3]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).