Stem-loop sequence hsa-mir-3179-1

Accession MI0014213
Description Homo sapiens miR-3179-1 stem-loop
Gene family MIPF0000900; mir-3179
Stem-loop 
                      a               gcc 
caggaucacagacguuuaaauu cacuccuucugcugu   u
|||||||||||||||||||||| |||||||||||||||    
guccuagugucugcaaauuuaa guggggaagaugacg   u
                      a               aca
Get sequence
Deep sequencing
22 reads, 3 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 14995365-14995448 [+]
sense
OTTHUMT00000409539 ; RP11-719K4.5-001; exon 1
OTTHUMT00000409539 ; RP11-719K4.5-001; exon 1
OTTHUMT00000409539 ; MIR3179-1-001; exon 1
ENST00000546674 ; RP11-719K4.5-001; exon 1
ENST00000546674 ; MIR3179-2-001; exon 1
ENST00000546674 ; MIR3179-1-001; exon 1
ENST00000432470 ; NPIP-201; intron 3
ENST00000413283 ; RP11-719K4.1-201; intron 8
Clustered miRNAs
< 10kb from hsa-mir-3179-1
hsa-mir-3179-1 chr16: 14995365-14995448 [+]
hsa-mir-3670-1 chr16: 15001574-15001638 [+]
hsa-mir-3180-1 chr16: 15005077-15005170 [+]
Database links

Mature sequence hsa-miR-3179

Accession MIMAT0015056
Sequence

52 -  

agaaggggugaaauuuaaacgu

 - 73

Get sequence
Deep sequencing 66 reads, 3 experiments
Evidence experimental; Solexa [1-3]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).