Stem-loop sequence hsa-mir-3176

Accession MI0014210
Description Homo sapiens miR-3176 stem-loop
Stem-loop 
u    ucuccagucu  a        c  c         cac    -     
 ggcc          gc gcucccgg ag cucgggcca   uccc ggga 
 ||||          || |||||||| || |||||||||   |||| ||| u
 ccgg          cg ugggggcc uc ggguccggu   aggg cccc 
g    ----------  g        a  a         --c    a
Get sequence
Deep sequencing
51 reads, 7 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 593277-593366 [+]
sense
OTTHUMT00000420513 ; SOLH-005; intron 2
OTTHUMT00000420515 ; SOLH-006; intron 2
OTTHUMT00000420513 ; SOLH-005; intron 2
OTTHUMT00000420515 ; SOLH-006; intron 2
OTTHUMT00000239271 ; SOLH-001; intron 3
OTTHUMT00000239271 ; SOLH-001; intron 3
OTTHUMT00000239271 ; SOLH-001; intron 3
ENST00000562370 ; SOLH-005; intron 2
ENST00000568988 ; SOLH-006; intron 2
ENST00000562370 ; SOLH-005; intron 2
ENST00000568988 ; SOLH-006; intron 2
ENST00000219611 ; SOLH-001; intron 3
ENST00000219611 ; SOLH-001; intron 3
ENST00000219611 ; SOLH-001; intron 3
Clustered miRNAs
< 10kb from hsa-mir-3176
hsa-mir-5587 chr16: 585316-585368 [+]
hsa-mir-3176 chr16: 593277-593366 [+]
Database links

Mature sequence hsa-miR-3176

Accession MIMAT0015053
Sequence

60 -  

acuggccugggacuaccgg

 - 78

Get sequence
Deep sequencing 50 reads, 6 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).