Stem-loop sequence hsa-mir-3171

Accession MI0014202
Description Homo sapiens miR-3171 stem-loop
Stem-loop 
          gaug                  c   a 
uauauauaga    uauggaaucuguauauau uau u
||||||||||    |||||||||||||||||| |||  
guauauaucu    auaccuuagauauauaug gua a
          --aa                  u   u
Get sequence
Deep sequencing
12 reads, 2 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 28102411-28102484 [-]
sense
OTTHUMT00000409668 ; CTD-3006G17.2-002; intron 2
OTTHUMT00000409669 ; CTD-3006G17.2-003; intron 2
OTTHUMT00000409670 ; CTD-3006G17.2-005; intron 2
OTTHUMT00000409668 ; CTD-3006G17.2-002; intron 2
OTTHUMT00000409669 ; CTD-3006G17.2-003; intron 2
OTTHUMT00000409670 ; CTD-3006G17.2-005; intron 2
OTTHUMT00000409668 ; CTD-3006G17.2-002; intron 2
OTTHUMT00000409669 ; CTD-3006G17.2-003; intron 2
OTTHUMT00000409670 ; CTD-3006G17.2-005; intron 2
OTTHUMT00000409671 ; CTD-3006G17.2-004; intron 3
OTTHUMT00000409671 ; CTD-3006G17.2-004; intron 3
OTTHUMT00000409671 ; CTD-3006G17.2-004; intron 3
ENST00000553392 ; CTD-3006G17.2-002; intron 2
ENST00000554904 ; CTD-3006G17.2-003; intron 2
ENST00000556890 ; CTD-3006G17.2-005; intron 2
ENST00000553392 ; CTD-3006G17.2-002; intron 2
ENST00000554904 ; CTD-3006G17.2-003; intron 2
ENST00000556890 ; CTD-3006G17.2-005; intron 2
ENST00000553392 ; CTD-3006G17.2-002; intron 2
ENST00000554904 ; CTD-3006G17.2-003; intron 2
ENST00000556890 ; CTD-3006G17.2-005; intron 2
ENST00000555797 ; CTD-3006G17.2-004; intron 3
ENST00000555797 ; CTD-3006G17.2-004; intron 3
ENST00000555797 ; CTD-3006G17.2-004; intron 3
antisense
OTTHUMT00000409672 ; RP11-572M18.1-002; intron 2
OTTHUMT00000409672 ; RP11-572M18.1-002; intron 2
OTTHUMT00000409672 ; RP11-572M18.1-002; intron 2
OTTHUMT00000409673 ; RP11-572M18.1-001; intron 3
OTTHUMT00000409673 ; RP11-572M18.1-001; intron 3
OTTHUMT00000409673 ; RP11-572M18.1-001; intron 3
ENST00000557359 ; RP11-572M18.1-002; intron 2
ENST00000557359 ; RP11-572M18.1-002; intron 2
ENST00000557359 ; RP11-572M18.1-002; intron 2
ENST00000557399 ; RP11-572M18.1-001; intron 3
ENST00000557399 ; RP11-572M18.1-001; intron 3
ENST00000557399 ; RP11-572M18.1-001; intron 3
Database links

Mature sequence hsa-miR-3171

Accession MIMAT0015046
Sequence

10 -  

agauguauggaaucuguauauauc

 - 33

Get sequence
Deep sequencing 12 reads, 2 experiments
Evidence experimental; Solexa [1-2], Northern [3]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3
PMID:20532037 "Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes" Hansen TB, Bramsen JB, Kjems J PLoS One. 5:e10961(2010).