Stem-loop sequence hsa-mir-3167

Accession

MI0014198

Description

Homo sapiens miR-3167 stem-loop

Stem-loop

      -  a                       uuu       a 
ggcugu gg ggcaccaguauuucugaaauucu   uucugaa u
|||||| || |||||||||||||||||||||||   |||||||  
ccgaca cc cuguggucauaaagacuuuagga   aggacuu u
      g  -                       ---       c 

Deep sequencing

9 reads, 2 experiments

Genome context

• Coordinates (GRCh37.p5): chr11: 126858354-126858438 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000386479 ; KIRREL3-001; intron 1

  OTTHUMT00000386480 ; KIRREL3-004; intron 1

  OTTHUMT00000386483 ; KIRREL3-003; intron 1

  OTTHUMT00000405151 ; KIRREL3-009; intron 1

  OTTHUMT00000405152 ; KIRREL3-008; intron 1

  OTTHUMT00000386479 ; KIRREL3-001; intron 1

  OTTHUMT00000386480 ; KIRREL3-004; intron 1

  OTTHUMT00000386483 ; KIRREL3-003; intron 1

  OTTHUMT00000405151 ; KIRREL3-009; intron 1

  OTTHUMT00000405152 ; KIRREL3-008; intron 1

  OTTHUMT00000386479 ; KIRREL3-001; intron 1

  OTTHUMT00000386480 ; KIRREL3-004; intron 1

  OTTHUMT00000386483 ; KIRREL3-003; intron 1

  OTTHUMT00000405151 ; KIRREL3-009; intron 1

  OTTHUMT00000405152 ; KIRREL3-008; intron 1

  OTTHUMT00000386485 ; KIRREL3-002; intron 2

  OTTHUMT00000386485 ; KIRREL3-002; intron 2

  OTTHUMT00000386485 ; KIRREL3-002; intron 2

  ENST00000525144 ; KIRREL3-001; intron 1

  ENST00000529097 ; KIRREL3-004; intron 1

  ENST00000525704 ; KIRREL3-003; intron 1

  ENST00000547738 ; KIRREL3-009; intron 1

  ENST00000549874 ; KIRREL3-008; intron 1

  ENST00000525144 ; KIRREL3-001; intron 1

  ENST00000529097 ; KIRREL3-004; intron 1

  ENST00000525704 ; KIRREL3-003; intron 1

  ENST00000547738 ; KIRREL3-009; intron 1

  ENST00000549874 ; KIRREL3-008; intron 1

  ENST00000525144 ; KIRREL3-001; intron 1

  ENST00000529097 ; KIRREL3-004; intron 1

  ENST00000525704 ; KIRREL3-003; intron 1

  ENST00000547738 ; KIRREL3-009; intron 1

  ENST00000549874 ; KIRREL3-008; intron 1

  ENST00000533026 ; KIRREL3-002; intron 2

  ENST00000533026 ; KIRREL3-002; intron 2

  ENST00000533026 ; KIRREL3-002; intron 2

Database links

• ENTREZGENE: 100422918;MIR3167

Mature sequence hsa-miR-3167

• Accession: MIMAT0015042
• Sequence: 54 - aggauuucagaaauacuggugu - 75
• Deep sequencing: 8 reads, 1 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3167
  • MICRORNA.ORG:hsa-miR-3167
  • MIRDB:hsa-miR-3167
  • RNA22-HSA:hsa-miR-3167
  • TARGETMINER:hsa-miR-3167

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).