Stem-loop sequence hsa-mir-3156-1

Accession

MI0014184

Description

Homo sapiens miR-3156-1 stem-loop

Gene family

MIPF0000891; mir-3156

Stem-loop

     -                     a    uuuac 
gcaga agaaagaucuggaagugggag cacu     u
||||| ||||||||||||||||||||| ||||      
ugucu ucuuucuagaccuucacccuc guga     a
     c                     g    uauau 

Deep sequencing

6 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr10: 45659462-45659536 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000047775 ; RP11-432I13.1-001; intron 2

  OTTHUMT00000047775 ; RP11-432I13.1-001; intron 2

  OTTHUMT00000047775 ; RP11-432I13.1-001; intron 2

  ENST00000444850 ; RP11-432I13.1-001; intron 2

  ENST00000444850 ; RP11-432I13.1-001; intron 2

  ENST00000444850 ; RP11-432I13.1-001; intron 2

Database links

• ENTREZGENE: 100422988;MIR3156-1

Mature sequence hsa-miR-3156-5p

• Accession: MIMAT0015030
• Previous IDs: hsa-miR-3156
• Sequence: 8 - aaagaucuggaagugggagaca - 29
• Deep sequencing: 18 reads, 3 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3156-5p
  • MICRORNA.ORG:hsa-miR-3156-5p
  • MIRDB:hsa-miR-3156-5p
  • RNA22-HSA:hsa-miR-3156-5p
  • TARGETMINER:hsa-miR-3156-5p

Mature sequence hsa-miR-3156-3p

• Accession: MIMAT0019209
• Sequence: 49 - cucccacuuccagaucuuucu - 69
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3156-3p
  • MIRDB:hsa-miR-3156-3p
  • TARGETMINER:hsa-miR-3156-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).