Stem-loop sequence hsa-mir-3151

Accession

MI0014178

Description

Homo sapiens miR-3151 stem-loop

Gene family

MIPF0001394; mir-3151

Stem-loop

               g aa           -----    c 
ggggugauggguggg c  ugggaucaggu     gccu a
||||||||||||||| |  |||||||||||     ||||  
ccccacuguccaccc g  acccuagucca     cggg a
               - ac           cccua    a 

Deep sequencing

70 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr8: 104166842-104166917 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000380255 ; BAALC-001; intron 1

  OTTHUMT00000380256 ; BAALC-002; intron 1

  OTTHUMT00000380257 ; BAALC-003; intron 1

  OTTHUMT00000380258 ; BAALC-009; intron 1

  OTTHUMT00000380259 ; BAALC-010; intron 1

  OTTHUMT00000380261 ; BAALC-005; intron 1

  OTTHUMT00000380255 ; BAALC-001; intron 1

  OTTHUMT00000380256 ; BAALC-002; intron 1

  OTTHUMT00000380257 ; BAALC-003; intron 1

  OTTHUMT00000380258 ; BAALC-009; intron 1

  OTTHUMT00000380259 ; BAALC-010; intron 1

  OTTHUMT00000380261 ; BAALC-005; intron 1

  OTTHUMT00000380255 ; BAALC-001; intron 1

  OTTHUMT00000380256 ; BAALC-002; intron 1

  OTTHUMT00000380257 ; BAALC-003; intron 1

  OTTHUMT00000380258 ; BAALC-009; intron 1

  OTTHUMT00000380259 ; BAALC-010; intron 1

  OTTHUMT00000380261 ; BAALC-005; intron 1

  ENST00000309982 ; BAALC-001; intron 1

  ENST00000438105 ; BAALC-002; intron 1

  ENST00000297574 ; BAALC-003; intron 1

  ENST00000306391 ; BAALC-009; intron 1

  ENST00000330955 ; BAALC-010; intron 1

  ENST00000519507 ; BAALC-005; intron 1

  ENST00000309982 ; BAALC-001; intron 1

  ENST00000438105 ; BAALC-002; intron 1

  ENST00000297574 ; BAALC-003; intron 1

  ENST00000306391 ; BAALC-009; intron 1

  ENST00000330955 ; BAALC-010; intron 1

  ENST00000519507 ; BAALC-005; intron 1

  ENST00000309982 ; BAALC-001; intron 1

  ENST00000438105 ; BAALC-002; intron 1

  ENST00000297574 ; BAALC-003; intron 1

  ENST00000306391 ; BAALC-009; intron 1

  ENST00000330955 ; BAALC-010; intron 1

  ENST00000519507 ; BAALC-005; intron 1

Database links

• ENTREZGENE: 100422992;MIR3151

Mature sequence hsa-miR-3151

• Accession: MIMAT0015024
• Sequence: 10 - gguggggcaaugggaucaggu - 30
• Deep sequencing: 70 reads, 6 experiments
• Evidence: experimental; Solexa [1-3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3151
  • MICRORNA.ORG:hsa-miR-3151
  • MIRDB:hsa-miR-3151
  • RNA22-HSA:hsa-miR-3151
  • TARGETMINER:hsa-miR-3151

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Moqadam FA, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).
3. PMID:22454130 "Transcription factors are targeted by differentially expressed miRNAs in primates" Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J Genome Biol Evol. 4:552-564(2012).