Stem-loop sequence hsa-mir-3138

Accession MI0014161
Description Homo sapiens miR-3138 stem-loop
Gene family MIPF0001428; mir-3138
Stem-loop 
                 c c         -  -   --g  c 
cccuccucggcacuucc c accucacug cc cgg   ug c
||||||||||||||||| | ||||||||| || |||   ||  
gggaggagccgugaggg g uggagugac gg guc   ac c
                 a a         a  u   aga  a
Get sequence
Deep sequencing
131 reads, 16 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr4: 10080235-10080316 [-]
sense
OTTHUMT00000359881 ; WDR1-005; intron 8
OTTHUMT00000359882 ; WDR1-006; intron 8
OTTHUMT00000359881 ; WDR1-005; intron 8
OTTHUMT00000359882 ; WDR1-006; intron 8
OTTHUMT00000359881 ; WDR1-005; intron 8
OTTHUMT00000359882 ; WDR1-006; intron 8
OTTHUMT00000359878 ; WDR1-002; intron 9
OTTHUMT00000359878 ; WDR1-002; intron 9
OTTHUMT00000359878 ; WDR1-002; intron 9
OTTHUMT00000359877 ; WDR1-001; intron 12
OTTHUMT00000359877 ; WDR1-001; intron 12
OTTHUMT00000359877 ; WDR1-001; intron 12
ENST00000515743 ; WDR1-006; intron 8
ENST00000502962 ; WDR1-005; intron 8
ENST00000439733 ; WDR1-203; intron 8
ENST00000515743 ; WDR1-006; intron 8
ENST00000502962 ; WDR1-005; intron 8
ENST00000439733 ; WDR1-203; intron 8
ENST00000515743 ; WDR1-006; intron 8
ENST00000502962 ; WDR1-005; intron 8
ENST00000502702 ; WDR1-002; intron 9
ENST00000382451 ; WDR1-201; intron 9
ENST00000502702 ; WDR1-002; intron 9
ENST00000382451 ; WDR1-201; intron 9
ENST00000502702 ; WDR1-002; intron 9
ENST00000382451 ; WDR1-201; intron 9
ENST00000443592 ; WDR1-204; intron 10
ENST00000443592 ; WDR1-204; intron 10
ENST00000499869 ; WDR1-001; intron 12
ENST00000382452 ; WDR1-202; intron 12
ENST00000499869 ; WDR1-001; intron 12
ENST00000382452 ; WDR1-202; intron 12
ENST00000499869 ; WDR1-001; intron 12
ENST00000382452 ; WDR1-202; intron 12
Database links

Mature sequence hsa-miR-3138

Accession MIMAT0015006
Sequence

48 -  

uguggacagugagguagagggagu

 - 71

Get sequence
Deep sequencing 122 reads, 13 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).