Stem-loop sequence hsa-mir-544b

Accession

MI0014159

Description

Homo sapiens miR-544b stem-loop

Gene family

MIPF0000436; mir-544

Stem-loop

  a         -       g    -  uu    uag u 
gg auuuuguua aaaugca aauc ca  ucug   c c
|| ||||||||| ||||||| |||| ||  ||||   | u
cc ugaaacaau uuuacgu uugg gu  agau   g g
  g         c       g    a  cc    -ca a 

Deep sequencing

30 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 124451286-124451363 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000355271 ; UMPS-001; intron 1

  OTTHUMT00000355272 ; UMPS-002; intron 1

  OTTHUMT00000355274 ; UMPS-004; intron 1

  OTTHUMT00000355275 ; UMPS-005; intron 1

  OTTHUMT00000355279 ; UMPS-009; intron 1

  OTTHUMT00000355271 ; UMPS-001; intron 1

  OTTHUMT00000355272 ; UMPS-002; intron 1

  OTTHUMT00000355274 ; UMPS-004; intron 1

  OTTHUMT00000355275 ; UMPS-005; intron 1

  OTTHUMT00000355279 ; UMPS-009; intron 1

  OTTHUMT00000355271 ; UMPS-001; intron 1

  OTTHUMT00000355272 ; UMPS-002; intron 1

  OTTHUMT00000355274 ; UMPS-004; intron 1

  OTTHUMT00000355275 ; UMPS-005; intron 1

  OTTHUMT00000355279 ; UMPS-009; intron 1

  OTTHUMT00000355278 ; UMPS-008; intron 2

  OTTHUMT00000355276 ; UMPS-006; intron 2

  OTTHUMT00000355278 ; UMPS-008; intron 2

  OTTHUMT00000355276 ; UMPS-006; intron 2

  OTTHUMT00000355278 ; UMPS-008; intron 2

  OTTHUMT00000355276 ; UMPS-006; intron 2

  ENST00000232607 ; UMPS-001; intron 1

  ENST00000462091 ; UMPS-002; intron 1

  ENST00000474588 ; UMPS-004; intron 1

  ENST00000497791 ; UMPS-005; intron 1

  ENST00000479719 ; UMPS-009; intron 1

  ENST00000538242 ; UMPS-203; intron 1

  ENST00000413078 ; UMPS-201; intron 1

  ENST00000232607 ; UMPS-001; intron 1

  ENST00000462091 ; UMPS-002; intron 1

  ENST00000474588 ; UMPS-004; intron 1

  ENST00000497791 ; UMPS-005; intron 1

  ENST00000479719 ; UMPS-009; intron 1

  ENST00000538242 ; UMPS-203; intron 1

  ENST00000413078 ; UMPS-201; intron 1

  ENST00000232607 ; UMPS-001; intron 1

  ENST00000462091 ; UMPS-002; intron 1

  ENST00000474588 ; UMPS-004; intron 1

  ENST00000497791 ; UMPS-005; intron 1

  ENST00000479719 ; UMPS-009; intron 1

  ENST00000538242 ; UMPS-203; intron 1

  ENST00000413078 ; UMPS-201; intron 1

  ENST00000467167 ; UMPS-008; intron 2

  ENST00000460034 ; UMPS-006; intron 2

  ENST00000536109 ; UMPS-202; intron 2

  ENST00000467167 ; UMPS-008; intron 2

  ENST00000460034 ; UMPS-006; intron 2

  ENST00000536109 ; UMPS-202; intron 2

  ENST00000467167 ; UMPS-008; intron 2

  ENST00000460034 ; UMPS-006; intron 2

  ENST00000536109 ; UMPS-202; intron 2

Database links

• ENTREZGENE: 100422864;MIR544B

Mature sequence hsa-miR-544b

• Accession: MIMAT0015004
• Sequence: 48 - accugagguugugcauuucuaa - 69
• Deep sequencing: 7 reads, 2 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-544b
  • MICRORNA.ORG:hsa-miR-544b
  • MIRDB:hsa-miR-544b
  • RNA22-HSA:hsa-miR-544b
  • TARGETMINER:hsa-miR-544b

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).