Stem-loop sequence hsa-mir-378b

Accession

MI0014154

Description

Homo sapiens miR-378b stem-loop

Gene family

MIPF0000168; mir-378

Stem-loop

    a  ga         g      ga 
gguc uu  gucuucaag cuagug  a
|||| ||  ||||||||| ||||||  a
ccag aa  cggagguuc ggucac  g
    a  ga         a      ga 

Deep sequencing

80363 reads, 22 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 10371913-10371969 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000340169 ; ATP2B2-009; intron 1

  OTTHUMT00000340169 ; ATP2B2-009; intron 1

  OTTHUMT00000340169 ; ATP2B2-009; intron 1

  OTTHUMT00000276090 ; ATP2B2-006; intron 2

  OTTHUMT00000276090 ; ATP2B2-006; intron 2

  OTTHUMT00000276090 ; ATP2B2-006; intron 2

  OTTHUMT00000276087 ; ATP2B2-003; intron 18

  OTTHUMT00000276087 ; ATP2B2-003; intron 18

  OTTHUMT00000276087 ; ATP2B2-003; intron 18

  OTTHUMT00000276086 ; ATP2B2-002; intron 19

  OTTHUMT00000276086 ; ATP2B2-002; intron 19

  OTTHUMT00000276086 ; ATP2B2-002; intron 19

  OTTHUMT00000250576 ; ATP2B2-001; intron 21

  OTTHUMT00000276088 ; ATP2B2-004; intron 21

  OTTHUMT00000276089 ; ATP2B2-005; intron 21

  OTTHUMT00000250576 ; ATP2B2-001; intron 21

  OTTHUMT00000276088 ; ATP2B2-004; intron 21

  OTTHUMT00000276089 ; ATP2B2-005; intron 21

  OTTHUMT00000250576 ; ATP2B2-001; intron 21

  OTTHUMT00000276088 ; ATP2B2-004; intron 21

  OTTHUMT00000276089 ; ATP2B2-005; intron 21

  ENST00000468426 ; ATP2B2-009; intron 1

  ENST00000468426 ; ATP2B2-009; intron 1

  ENST00000468426 ; ATP2B2-009; intron 1

  ENST00000467702 ; ATP2B2-006; intron 2

  ENST00000467702 ; ATP2B2-006; intron 2

  ENST00000467702 ; ATP2B2-006; intron 2

  ENST00000452124 ; ATP2B2-003; intron 18

  ENST00000429937 ; ATP2B2-204; intron 18

  ENST00000452124 ; ATP2B2-003; intron 18

  ENST00000429937 ; ATP2B2-204; intron 18

  ENST00000452124 ; ATP2B2-003; intron 18

  ENST00000383800 ; ATP2B2-002; intron 19

  ENST00000383800 ; ATP2B2-002; intron 19

  ENST00000383800 ; ATP2B2-002; intron 19

  ENST00000535386 ; ATP2B2-205; intron 20

  ENST00000535386 ; ATP2B2-205; intron 20

  ENST00000352432 ; ATP2B2-001; intron 21

  ENST00000460129 ; ATP2B2-004; intron 21

  ENST00000397077 ; ATP2B2-005; intron 21

  ENST00000343816 ; ATP2B2-202; intron 21

  ENST00000352432 ; ATP2B2-001; intron 21

  ENST00000460129 ; ATP2B2-004; intron 21

  ENST00000397077 ; ATP2B2-005; intron 21

  ENST00000343816 ; ATP2B2-202; intron 21

  ENST00000352432 ; ATP2B2-001; intron 21

  ENST00000460129 ; ATP2B2-004; intron 21

  ENST00000397077 ; ATP2B2-005; intron 21

  ENST00000343816 ; ATP2B2-201; intron 21

  ENST00000360273 ; ATP2B2-203; intron 22

  ENST00000360273 ; ATP2B2-203; intron 22

  ENST00000360273 ; ATP2B2-202; intron 22

Database links

• ENTREZGENE: 100422933;MIR378B

Mature sequence hsa-miR-378b

• Accession: MIMAT0014999
• Sequence: 34 - acuggacuuggaggcagaa - 52
• Deep sequencing: 80362 reads, 21 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-378b
  • MICRORNA.ORG:hsa-miR-378b
  • MIRDB:hsa-miR-378b
  • RNA22-HSA:hsa-miR-378b
  • TARGETMINER:hsa-miR-378b

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).