Stem-loop sequence hsa-mir-3130-1

Accession MI0014147
Description Homo sapiens miR-3130-1 stem-loop
Gene family MIPF0000845; mir-3130
Stem-loop 
                                  gu 
cuugucaugucuuacccagucuccggugcagccu  u
||||||||||||||||||||||||||||||||||  g
gaacaguacagaaugggucagaggccacgucgga  u
                                  ac
Get sequence
Deep sequencing
123 reads, 23 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr2: 207647958-207648032 [-]
antisense
OTTHUMT00000336777 ; FASTKD2-002; intron 7
OTTHUMT00000336778 ; FASTKD2-003; intron 7
OTTHUMT00000336779 ; FASTKD2-004; intron 7
OTTHUMT00000256428 ; FASTKD2-001; intron 7
OTTHUMT00000256428 ; FASTKD2-001; intron 7
OTTHUMT00000336777 ; FASTKD2-002; intron 7
OTTHUMT00000336778 ; FASTKD2-003; intron 7
OTTHUMT00000336779 ; FASTKD2-004; intron 7
OTTHUMT00000256428 ; FASTKD2-001; intron 7
OTTHUMT00000336777 ; FASTKD2-002; intron 7
OTTHUMT00000336778 ; FASTKD2-003; intron 7
OTTHUMT00000336779 ; FASTKD2-004; intron 7
ENST00000236980 ; FASTKD2-001; intron 7
ENST00000402774 ; FASTKD2-002; intron 7
ENST00000403094 ; FASTKD2-003; intron 7
ENST00000487777 ; FASTKD2-004; intron 7
ENST00000236980 ; FASTKD2-001; intron 7
ENST00000402774 ; FASTKD2-002; intron 7
ENST00000403094 ; FASTKD2-003; intron 7
ENST00000487777 ; FASTKD2-004; intron 7
ENST00000236980 ; FASTKD2-001; intron 7
ENST00000402774 ; FASTKD2-002; intron 7
ENST00000403094 ; FASTKD2-003; intron 7
ENST00000487777 ; FASTKD2-004; intron 7
Clustered miRNAs
< 10kb from hsa-mir-3130-1
hsa-mir-3130-2 chr2: 207647958-207648032 [+]
hsa-mir-3130-1 chr2: 207647958-207648032 [-]
Database links

Mature sequence hsa-miR-3130-5p

Accession MIMAT0014995
Sequence

13 -  

uacccagucuccggugcagcc

 - 33

Get sequence
Deep sequencing 30 reads, 5 experiments
Evidence experimental; Solexa [1,3]
Predicted targets

Mature sequence hsa-miR-3130-3p

Accession MIMAT0014994
Sequence

44 -  

gcugcaccggagacuggguaa

 - 64

Get sequence
Deep sequencing 183 reads, 21 experiments
Evidence experimental; Solexa [1-3]
Predicted targets

References

1
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
3
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).