Stem-loop sequence hsa-mir-3126

Accession

MI0014143

Description

Homo sapiens miR-3126 stem-loop

Gene family

MIPF0001525; mir-3126

Stem-loop

        a  a g   a         a   cuggu 
augauuau ug g gac gaugccaga gca     u
|||||||| || | ||| ||||||||| |||      
uauuaaua ac c cug cuacggucu cgu     a
        g  a a   c         a   uuagu 

Deep sequencing

16 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr2: 69330814-69330887 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000327259 ; ANTXR1-005; intron 4

  OTTHUMT00000327259 ; ANTXR1-005; intron 4

  OTTHUMT00000327259 ; ANTXR1-005; intron 4

  OTTHUMT00000251770 ; ANTXR1-001; intron 10

  OTTHUMT00000327211 ; ANTXR1-003; intron 10

  OTTHUMT00000327258 ; ANTXR1-002; intron 10

  OTTHUMT00000251770 ; ANTXR1-001; intron 10

  OTTHUMT00000327211 ; ANTXR1-003; intron 10

  OTTHUMT00000327258 ; ANTXR1-002; intron 10

  OTTHUMT00000251770 ; ANTXR1-001; intron 10

  OTTHUMT00000327211 ; ANTXR1-003; intron 10

  OTTHUMT00000327258 ; ANTXR1-002; intron 10

  ENST00000482235 ; ANTXR1-005; intron 4

  ENST00000482235 ; ANTXR1-005; intron 4

  ENST00000482235 ; ANTXR1-005; intron 4

  ENST00000303714 ; ANTXR1-001; intron 10

  ENST00000409829 ; ANTXR1-003; intron 10

  ENST00000409349 ; ANTXR1-002; intron 10

  ENST00000303714 ; ANTXR1-001; intron 10

  ENST00000409829 ; ANTXR1-003; intron 10

  ENST00000409349 ; ANTXR1-002; intron 10

  ENST00000303714 ; ANTXR1-001; intron 10

  ENST00000409829 ; ANTXR1-003; intron 10

  ENST00000409349 ; ANTXR1-002; intron 10

Database links

• ENTREZGENE: 100423030;MIR3126

Mature sequence hsa-miR-3126-5p

• Accession: MIMAT0014989
• Sequence: 10 - ugagggacagaugccagaagca - 31
• Deep sequencing: 16 reads, 4 experiments
• Evidence: experimental; Solexa [2-4]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3126-5p
  • MICRORNA.ORG:hsa-miR-3126-5p
  • MIRDB:hsa-miR-3126-5p
  • RNA22-HSA:hsa-miR-3126-5p
  • TARGETMINER:hsa-miR-3126-5p

Mature sequence hsa-miR-3126-3p

• Accession: MIMAT0015377
• Sequence: 46 - caucuggcauccgucacacaga - 67
• Evidence: experimental; SOLiD [1], Solexa [4]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3126-3p
  • MICRORNA.ORG:hsa-miR-3126-3p
  • MIRDB:hsa-miR-3126-3p
  • RNA22-HSA:hsa-miR-3126-3p
  • TARGETMINER:hsa-miR-3126-3p

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).
2. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
4. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).