Stem-loop sequence hsa-mir-3123

Accession

MI0014139

Description

Homo sapiens miR-3123 stem-loop

Stem-loop

      --u        ug      ccau      au 
auggau   ugauugaa  auucuc    uuccac  g
||||||   ||||||||  ||||||    ||||||  g
uaccua   acuaauuu  uaagag    gaggug  a
      ugu        gu      accc      ag 

Deep sequencing

70 reads, 12 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 241295572-241295646 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000097467 ; RGS7-004; intron 1

  OTTHUMT00000097467 ; RGS7-004; intron 1

  OTTHUMT00000097467 ; RGS7-004; intron 1

  OTTHUMT00000096719 ; RGS7-001; intron 2

  OTTHUMT00000096720 ; RGS7-002; intron 2

  OTTHUMT00000096721 ; RGS7-003; intron 2

  OTTHUMT00000096719 ; RGS7-001; intron 2

  OTTHUMT00000096720 ; RGS7-002; intron 2

  OTTHUMT00000096721 ; RGS7-003; intron 2

  OTTHUMT00000096719 ; RGS7-001; intron 2

  OTTHUMT00000096720 ; RGS7-002; intron 2

  OTTHUMT00000096721 ; RGS7-003; intron 2

  ENST00000348120 ; RGS7-004; intron 1

  ENST00000366562 ; RGS7-202; intron 1

  ENST00000407727 ; RGS7-204; intron 1

  ENST00000401882 ; RGS7-203; intron 1

  ENST00000331110 ; RGS7-201; intron 1

  ENST00000446183 ; RGS7-205; intron 1

  ENST00000348120 ; RGS7-004; intron 1

  ENST00000366562 ; RGS7-202; intron 1

  ENST00000407727 ; RGS7-204; intron 1

  ENST00000401882 ; RGS7-203; intron 1

  ENST00000331110 ; RGS7-201; intron 1

  ENST00000446183 ; RGS7-205; intron 1

  ENST00000348120 ; RGS7-004; intron 1

  ENST00000366562 ; RGS7-202; intron 1

  ENST00000407727 ; RGS7-204; intron 1

  ENST00000401882 ; RGS7-203; intron 1

  ENST00000331110 ; RGS7-201; intron 1

  ENST00000446183 ; RGS7-205; intron 1

  ENST00000366565 ; RGS7-001; intron 2

  ENST00000366564 ; RGS7-002; intron 2

  ENST00000366563 ; RGS7-003; intron 2

  ENST00000366565 ; RGS7-001; intron 2

  ENST00000366564 ; RGS7-002; intron 2

  ENST00000366563 ; RGS7-003; intron 2

  ENST00000366565 ; RGS7-001; intron 2

  ENST00000366564 ; RGS7-002; intron 2

  ENST00000366563 ; RGS7-003; intron 2

Database links

• ENTREZGENE: 100422856;MIR3123

Mature sequence hsa-miR-3123

• Accession: MIMAT0014985
• Sequence: 49 - cagagaauuguuuaauc - 65
• Deep sequencing: 67 reads, 10 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3123
  • MICRORNA.ORG:hsa-miR-3123
  • MIRDB:hsa-miR-3123
  • RNA22-HSA:hsa-miR-3123
  • TARGETMINER:hsa-miR-3123

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).