Stem-loop sequence mmu-mir-3088

Accession

MI0014081 (change log)

Symbol

MGI:Mir3088

Description

Mus musculus miR-3088 stem-loop

Stem-loop

   ------   ug   gcua                 u  ggc 
5'       cag  ccu    ugcaguuguucaugagc cu   u
         |||  |||    ||||||||||||||||| ||    
3'       guu  gga    acgucgacgaguacuug ga   c
   gucguc   gu   ---a                 -  agc 

Deep sequencing

152 reads, 0 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 28733278-28733351 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000027604 ; Ak8-001; intron 5

  OTTMUST00000027605 ; Ak8-002; intron 6

  ENSMUST00000074156 ; Ak8-001; intron 5

  ENSMUST00000123794 ; Ak8-002; intron 6

Database links

• EntrezGene:Mir3088
• MGI:Mir3088
• RNAcentral:URS000075CB92_10090
• miRBase Tracker:MI0014081

Mature sequence mmu-miR-3088-5p

• Accession: MIMAT0014897
• Previous IDs: mmu-miR-3088*
• Sequence: 9 - gcuaugcaguuguucaugagcu - 30
• Deep sequencing: 13 reads, 7 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3088-5p
  • miRDB:mmu-miR-3088-5p

Mature sequence mmu-miR-3088-3p

• Accession: MIMAT0014898
• Previous IDs: mmu-miR-3088
• Sequence: 44 - uucaugagcagcugcaaaggugu - 66
• Deep sequencing: 137 reads, 36 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000061DC04_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3088-3p
  • miRDB:mmu-miR-3088-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).