Stem-loop sequence mmu-mir-467a-4

Accession

MI0014059

Symbol

MGI:Mir467a-4

Description

Mus musculus miR-467a-4 stem-loop

Gene family

MIPF0000316; mir-467

Stem-loop

u    c      c   a   cc  c             ua 
 gugc ugugug gua gug  ug auguauaugcgug  u
 |||| |||||| ||| |||  || |||||||||||||  a
 cacg acacac cau cac  ac uacauauacguau  u
a    u      a   c   ac  a             uu 

Deep sequencing

19936 reads, 85 experiments

Genome context

• Coordinates (GRCm38): chr2: 10486135-10486217 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-467a-4

• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]
• mmu-mir-669a-8: chr2: 10491566-10491652 [+]
• mmu-mir-467a-7: chr2: 10493510-10493592 [+]
• mmu-mir-466b-6: chr2: 10493798-10493887 [+]
• mmu-mir-669a-9: chr2: 10494028-10494114 [+]
• mmu-mir-467a-8: chr2: 10495980-10496062 [+]

Database links

• ENTREZGENE: 100526523;Mir467a-4
• MGI: 3719573;Mir467a-4

Mature sequence mmu-miR-467a-5p

• Accession: MIMAT0003409
• Previous IDs: mmu-miR-467*;mmu-miR-467a
• Sequence: 15 - uaagugccugcauguauaugcg - 36
• Deep sequencing: 177369 reads, 75 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-467a-5p
  • MICRORNA.ORG:mmu-miR-467a-5p
  • MIRDB:mmu-miR-467a-5p
  • RNA22-MMU:mmu-miR-467a-5p
  • TARGETSCAN-VERT:mmu-miR-467a

Mature sequence mmu-miR-467a-3p

• Accession: MIMAT0002108
• Previous IDs: mmu-miR-467;mmu-miR-467a;mmu-miR-467a*;mmu-miR-467a-1*;mmu-miR-467a*
• Sequence: 50 - cauauacauacacacaccuaca - 71
• Deep sequencing: 20983 reads, 71 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-467a-3p
  • MICRORNA.ORG:mmu-miR-467a-3p
  • MIRDB:mmu-miR-467a-3p
  • RNA22-MMU:mmu-miR-467a-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).