Stem-loop sequence mmu-mir-669a-6

Accession

MI0014058

Description

Mus musculus miR-669a-6 stem-loop

Gene family

MIPF0000316; mir-467

Stem-loop

u    a     g    gu        c     c    c   au 
 gugc ugugu uaua  ugugugug auguu augu uau  u
 |||| ||||| ||||  |||||||| ||||| |||| |||   
 cacg acgca auau  acacacac uacaa uaca aua  u
a    a     a    gc        a     -    u   ag 

Deep sequencing

11481 reads, 81 experiments

Genome context

• Coordinates (GRCm38): chr2: 10484196-10484282 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000102064 ; mmu-mir-669a-1.1-201; exon 1

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669a-6

• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]
• mmu-mir-669p-1: chr2: 10489116-10489202 [+]
• mmu-mir-467a-6: chr2: 10491048-10491130 [+]
• mmu-mir-669a-8: chr2: 10491566-10491652 [+]
• mmu-mir-467a-7: chr2: 10493510-10493592 [+]
• mmu-mir-466b-6: chr2: 10493798-10493887 [+]
• mmu-mir-669a-9: chr2: 10494028-10494114 [+]

Database links

• ENTREZGENE: 100526485;Mir669a-6

Mature sequence mmu-miR-669a-5p

• Accession: MIMAT0003477
• Previous IDs: mmu-miR-669a
• Sequence: 16 - aguugugugugcauguucaugucu - 39
• Deep sequencing: 90605 reads, 72 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-669a-5p
  • MICRORNA.ORG:mmu-miR-669a-5p
  • MIRDB:mmu-miR-669a-5p
  • RNA22-MMU:mmu-miR-669a-5p
  • TARGETSCAN-VERT:mmu-miR-669a

Mature sequence mmu-miR-669a-3p

• Accession: MIMAT0017243
• Sequence: 52 - acauaacauacacacacacguau - 74
• Deep sequencing: 41656 reads, 75 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-669a-3p
  • MIRDB:mmu-miR-669a-3p
  • RNA22-MMU:mmu-miR-669a-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).