Stem-loop sequence api-mir-3043-1

Accession MI0013994
Description Acyrthosiphon pisum miR-3043-1 stem-loop
Gene family MIPF0001110; mir-3043
Stem-loop 
--        u      uu     cug  cua 
  ucaguaug guccuu  augug   ug   u
  |||||||| ||||||  |||||   ||   a
  gguuauac caggaa  uacac   ac   u
ga        u      -u     aaa  uau
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Genome context
Coordinates (AphidBase2) Overlapping transcripts
GL349650.1: 609772-609835 [-]
intergenic
Clustered miRNAs
< 10kb from api-mir-3043-1
api-mir-3043-3 GL349650.1: 612449-612512 [-]
api-mir-3043-2 GL349650.1: 611113-611176 [-]
api-mir-3043-1 GL349650.1: 609772-609835 [-]
Database links

Mature sequence api-miR-3043

Accession MIMAT0014781
Sequence

42 -  

cacauuaaggacucauauuggag

 - 64

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Evidence experimental; Solexa [1]

References

1
PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).