Stem-loop sequence api-mir-3024

Accession MI0013967
Description Acyrthosiphon pisum miR-3024 stem-loop
Stem-loop 
uc    gg      uag   c   ---    a 
  uuug  auuuaa   agc ggu   ugaa u
  ||||  ||||||   ||| |||   |||| u
  aaac  uaaauu   ucg cca   gcuu g
ua    uu      cua   a   uau    u
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Genome context
Coordinates (AphidBase2) Overlapping transcripts
GL350117.1: 223576-223639 [-]
intergenic
Clustered miRNAs
< 10kb from api-mir-3024
api-mir-3032 GL350117.1: 224322-224383 [-]
api-mir-3024 GL350117.1: 223576-223639 [-]
api-mir-3016 GL350117.1: 223456-223518 [-]
api-mir-3053 GL350117.1: 223099-223161 [-]
Database links

Mature sequence api-miR-3024

Accession MIMAT0014760
Sequence

1 -  

ucuuugggauuuaauagagccggu

 - 24

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Evidence experimental; Solexa [1]

References

1
PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).