Stem-loop sequence bmo-mir-3001

Accession MI0013861
Description Bombyx mori miR-3001 stem-loop
Stem-loop 
guaugugauuca    -   uu   u        uu   --       auuccg   ucg 
            gaug cgu  aag ugaaagaa  gua  gauuuug      uuu   c
            |||| |||  ||| ||||||||  |||  |||||||      |||    
            cuac gcg  uuc guuuucuu  uau  uuaagac      aaa   c
cgauuaccggaa    u   gu   u        uu   ag       gacuua   uaa
Get sequence
Deep sequencing
355 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2795: 3132203-3132321 [-]
intergenic
nscaf2883: 290245-290363 [+]
intergenic
nscaf2993: 3137472-3137590 [+]
intergenic
scaffold11815: 197-315 [+]
intergenic
scaffold6890: 650-768 [-]
intergenic

Mature sequence bmo-miR-3001

Accession MIMAT0014665
Sequence

21 -  

uaaguugaaagaauuguagauuuuga

 - 46

Get sequence
Deep sequencing 97 reads, 3 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).