Stem-loop sequence tgu-mir-16a

AccessionMI0013811 (change log)
DescriptionTaeniopygia guttata miR-16a stem-loop
Gene family MIPF0000006; mir-15
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-16_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-16 microRNA precursor family is a group of related small non-coding RNA genes that regulates gene expression. miR-16, miR-15, mir-195 and miR-457 are related microRNA precursor sequences from the mir-15 gene family. This microRNA family appears to be vertebrate specific and its members have been predicted or experimentally validated in a wide range of vertebrate species (MIPF0000006).

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   -----------u   a              -  a        u uuaagac 
5'             guc uacuuuagcagcac gu aauauugg g       u
               ||| |||||||||||||| || |||||||| |        
3'             cgg augaagucgucgug ca uuaugacc c       g
   gucuucaccgau   a              u  a        u uauaaau 
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr1: 55910032-55910123 [+]
ENSTGUT00000018487 ; tgu-mir-16a-201; exon 1
Clustered miRNAs
< 10kb from tgu-mir-16a
tgu-mir-15achr1: 55909891-55909961 [+]
tgu-mir-16achr1: 55910032-55910123 [+]
Database links

Mature sequence tgu-miR-16a-5p

Accession MIMAT0014583
Previous IDstgu-miR-16a

11 - 


 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-16a-3p

Accession MIMAT0014647
Previous IDstgu-miR-16a*

51 - 


 - 72

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]


PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).