Stem-loop sequence cqu-mir-998

Accession MI0013632
Description Culex quinquefasciatus miR-998 stem-loop
Gene family MIPF0000952; mir-998
Stem-loop 
aca  -uguu     auu    ga     c        gu     -  g  uu 
   ga     ggcca   ccgg  cugaa ucucgugg  cugca gu cu  u
   ||     |||||   ||||  ||||| ||||||||  ||||| || ||  c
   cu     cuggu   ggcc  gacuu agaguacc  gaugu ca gg  g
--g  uuguu     cgu    uc     -        ac     u  a  uu
Get sequence
Deep sequencing
436 reads, 1 experiments
Genome context
Coordinates (CpipJ1) Overlapping transcripts
supercont3.153: 639506-639609 [-]
intergenic
Clustered miRNAs
< 10kb from cqu-mir-998
cqu-mir-11 supercont3.153: 639666-639741 [-]
cqu-mir-998 supercont3.153: 639506-639609 [-]

Mature sequence cqu-miR-998

Accession MIMAT0014445
Sequence

65 -  

uagcaccaugagauucagc

 - 83

Get sequence
Deep sequencing 436 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).