Stem-loop sequence cqu-mir-1000

Accession MI0013599
Description Culex quinquefasciatus miR-1000 stem-loop
Gene family MIPF0000701; mir-1000
Stem-loop 
--uuuu       aa    uauau       uc         --  uu 
      gcuagaa  cgau     uguccug  acagcagua  cu  u
      |||||||  ||||     |||||||  |||||||||  ||  c
      cgaucuu  guua     acagggc  uguugucau  ga  c
cacugc       -a    cauuu       uu         uc  uu
Get sequence
Deep sequencing
49 reads, 1 experiments
Genome context
Coordinates (CpipJ1) Overlapping transcripts
supercont3.153: 102798-102891 [-]
intergenic

Mature sequence cqu-miR-1000

Accession MIMAT0014403
Sequence

19 -  

auauuguccugucacagcagu

 - 39

Get sequence
Deep sequencing 49 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).