Stem-loop sequence cqu-mir-9

Accession

MI0013581 (change log)

Description

Culex quinquefasciatus miR-9 stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   au   ua          c  a            cu    g     u  uga   ug 
5'   gcg  uaauuuccgg ug aucuuugguauu  agcu uagaa gu   gcu  u
     |||  |||||||||| || ||||||||||||  |||| ||||| ||   |||   
3'   cgu  guuaaggguc ac uggagaccauga  ucga aucuu ua   ugg  u
   gu   uc          a  c            uu    a     c  ---   ca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.83: 64711-64821 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013581

Mature sequence cqu-miR-9-5p

• Accession: MIMAT0014380
• Previous IDs: cqu-miR-9
• Sequence: 23 - ucuuugguauucuagcuguaga - 44
• Evidence: experimental; Illumina [1]

Mature sequence cqu-miR-9-3p

• Accession: MIMAT0014381
• Previous IDs: cqu-miR-9*
• Sequence: 70 - uaaagcuuuaguaccagagguc - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).