Stem-loop sequence aae-mir-2944a

Accession MI0013509
Description Aedes aegypti miR-2944a stem-loop
Gene family MIPF0001335; mir-2944
Stem-loop 
        ga  uu          c  agu 
cguugaag  ac  cugcugugau ug   u
||||||||  ||  |||||||||| ||   a
guaauuuc  ug  gaugacacua ac   g
        -a  uu          u  aua
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Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.464: 825450-825511 [+]
intergenic
Clustered miRNAs
< 10kb from aae-mir-2944a
aae-mir-286a supercont1.464: 824995-825091 [+]
aae-mir-2944b supercont1.464: 825313-825374 [+]
aae-mir-2944a supercont1.464: 825450-825511 [+]
aae-mir-309b supercont1.464: 825629-825699 [+]

Mature sequence aae-miR-2944a-5p

Accession MIMAT0014302
Previous IDs aae-miR-2944a
Sequence

5 -  

gaaggaacuucugcugugaucuga

 - 28

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Evidence experimental; 454 [1]

Mature sequence aae-miR-2944a-3p

Accession MIMAT0014303
Previous IDs aae-miR-2944a*
Sequence

39 -  

uaucacaguaguuguacuuuaa

 - 60

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).