Stem-loop sequence aae-mir-100

Accession MI0013497
Description Aedes aegypti miR-100 stem-loop
Gene family MIPF0000025; mir-99
Stem-loop 
   uag      ------      cc    u      a      g     aa      - -  ccg 
gcg   ugguug      uaguua  cauu gcagga cccgua auccg  cuugug c ug   u
|||   ||||||      ||||||  |||| |||||| |||||| |||||  |||||| | ||    
ugu   gcuagc      aucggu  guag cgucuu ggguau uaggc  gaacau g ac   u
   uua      uacgaa      au    c      a      g     aa      u u  acu
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.43: 1142154-1142279 [+]
intergenic

Mature sequence aae-miR-100

Accession MIMAT0014291
Sequence

31 -  

aacccguagauccgaacuugug

 - 52

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Evidence experimental; 454 [1], Solexa [2]

References

1
PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).
2
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).