Stem-loop sequence aae-mir-278

Accession MI0013450
Description Aedes aegypti miR-278 stem-loop
Gene family MIPF0000155; mir-278
Stem-loop 
--u   -            u     u  g      -ug auu 
   ggu gcgaacggacga agucu ca cggccg   c   u
   ||| |||||||||||| ||||| || ||||||   |    
   cca uguuugccugcu ucagg gu gcuggu   g   g
ccg   a            u     -  g      uaa aua
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.16: 3596261-3596341 [+]
intergenic

Mature sequence aae-miR-278-5p

Accession MIMAT0014237
Previous IDs aae-miR-278
Sequence

9 -  

acggacgauagucuucagcggcc

 - 31

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Evidence experimental; 454 [1], Solexa [2]

Mature sequence aae-miR-278-3p

Accession MIMAT0014238
Previous IDs aae-miR-278*
Sequence

51 -  

ucggugggacuuucguccguuu

 - 72

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Evidence experimental; Solexa [2]

References

1
PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).
2
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).