Stem-loop sequence aae-bantam

Accession MI0013439
Description Aedes aegypti bantam stem-loop
Gene family MIPF0000153; bantam
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled bantam_microRNA. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology bantam microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

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Stem-loop
agaac         uuuuc     g    au   au 
     cgguuuuca     gaucu acuu  uug  u
     |||||||||     ||||| ||||  |||   
     gucgaaagu     cuaga ugag  aac  u
uuuua         -uuua     g    --   aa 
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.49: 1579552-1579622 [-]
intergenic

Mature sequence aae-bantam-5p

Accession MIMAT0014218
Sequence

5 - 

ccgguuuucauuuucgaucugac

 - 27

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Evidence experimental; Solexa [2]

Mature sequence aae-bantam-3p

Accession MIMAT0014219
Sequence

47 - 

ugagaucauuuugaaagcugau

 - 68

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Evidence experimental; 454 [1], Solexa [2]

References

1
2
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).