Stem-loop sequence bma-mir-71

AccessionMI0013332 (change log)
DescriptionBrugia malayi miR-71 stem-loop
Gene family MIPF0000278; mir-71
Literature search

4 open access papers mention bma-mir-71
(39 sentences)

Stem-loop
   agcaugcu   ugu   u           u         ---   g  a a 
5'         gug   cgg ggugaaagaca ggguaguga   gac uu g a
           |||   ||| ||||||||||| |||||||||   ||| || | u
3'         cac   gcu ccgcuuuuugu cuuaucacu   cug aa c u
   --------   uau   -           -         aug   g  - u 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (PRJNA10729_WB240; GCA_000002995.2) Overlapping transcripts
Bmal_v3_scaffold75: 45674-45764 [-]
intergenic
Clustered miRNAs
< 10kb from bma-mir-71
bma-mir-71Bmal_v3_scaffold75: 45674-45764 [-]
bma-mir-2aBmal_v3_scaffold75: 41811-41901 [-]
Database links

Mature sequence bma-miR-71

Accession MIMAT0014106
Sequence

21 - 

ugaaagacauggguaguga

 - 39

Get sequence
Evidence experimental; cloned [1], Illumina [2]

References

1
PMID:19874857 "Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi" Poole CB, Davis PJ, Jin J, McReynolds LA Mol Biochem Parasitol. 169:87-94(2010).
2
PMID:24824352 "Diversity and expression of microRNAs in the filarial parasite, Brugia malayi" Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA PLoS One. 9:e96498(2014).