Stem-loop sequence ccl-MIR396

Accession

MI0013304

Description

Citrus clementine miR396 stem-loop

Gene family

MIPF0000047; MIR396

Stem-loop

agagugguccuugaaauagccucuuuguaugggcuuccugcuuaauucuuccucucuaacaucgaguguaaaaugaauggaagaucaucaagccacagauaugagaucugaacauuauuauuauuaaguccuggucaugcuuuuccacagcuuucuugaacuuccacuguuugcugauuaauac     --     cu    ----a     -  ua  u 
                                                                                                                                                                                        acggc  ucuug  agcu     ggcgc cg  ug a
                                                                                                                                                                                        |||||  |||||  ||||     ||||| ||  ||  
                                                                                                                                                                                        ugucg  agaac  ucga     ccgcg gc  ac g
-----------------------------------------------------------------------------------------------------------------------------------------------------------guuuaggacuuccacacgguacaagaggg     aa     --    gggua     c  -c  a 

Mature sequence ccl-miR396

• Accession: MIMAT0014078
• Sequence: 143 - uuccacagcuuucuugaacuu - 163
• Evidence: experimental; Northern [1]

References

1. PMID:19585144 "Identification and characterization of 27 conserved microRNAs in citrus" Song C, Fang J, Li X, Liu H, Thomas Chao C Planta. 230:671-685(2009).