Stem-loop sequence zma-MIR166n

Accession

MI0013197 (change log)

Description

Zea mays miR166n stem-loop

Gene family

MIPF0000004; MIR166

Literature search

32 open access papers mention zma-MIR166n
(205 sentences)

Stem-loop

   --       uu      cu  gu            -  y   cuug   g 
5'   gggauug  gucugg  cg  gucuccggucga ga ggc    ccg c
     |||||||  ||||||  ||  |||||||||||| || |||    |||  
3'   cccuaac  cggacc  gc  uagaggccagcu cu ucg    ggc g
   uu       uu      ag  uc            g  g   ---a   c 

Deep sequencing

140763 reads, 8.12e+03 reads per million, 177 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr4: 181112182-181112277 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013197

Mature sequence zma-miR166n-5p

• Accession: MIMAT0015321
• Previous IDs: zma-miR166n*
• Sequence: 2 - ggauuguugucuggcucggug - 22
• Deep sequencing: 355 reads, 119 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000077D96D_4577

Mature sequence zma-miR166n-3p

• Accession: MIMAT0013986
• Previous IDs: zma-miR166n
• Sequence: 75 - ucggaccaggcuucaaucccu - 95
• Deep sequencing: 139953 reads, 56 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000258493_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).