Stem-loop sequence ssc-mir-92a-1

AccessionMI0013125 (change log)
DescriptionSus scrofa miR-92a-1 stem-loop
Gene family MIPF0000013; mir-25
Literature search

17 open access papers mention ssc-mir-92a-1
(47 sentences)

Stem-loop
   -----cu   uac            c   u           uu 
5'        uuc   acagguugggau ggu gcaaugcugug  u
          |||   |||||||||||| ||| |||||||||||   
3'        gag   uguccggcccug uca cguuaugguau  c
   gugguuu   --u            u   -           gu 
Get sequence
Deep sequencing
23266 reads, 4.53e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr11: 66610762-66610841 [+]
intergenic
Clustered miRNAs
< 10kb from ssc-mir-92a-1
ssc-mir-17chr11: 66610060-66610136 [+]
ssc-mir-18achr11: 66610195-66610286 [+]
ssc-mir-19achr11: 66610343-66610424 [+]
ssc-mir-20achr11: 66610513-66610583 [+]
ssc-mir-19b-1chr11: 66610642-66610721 [+]
ssc-mir-92a-1chr11: 66610762-66610841 [+]
Database links

Mature sequence ssc-miR-92a

Accession MIMAT0013908
Sequence

48 - 

uauugcacuugucccggccugu

 - 69

Get sequence
Deep sequencing36935 reads, 15 experiments
Evidence experimental; Illumina [1,3-4], cloned [2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
4
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).