Stem-loop sequence hsa-mir-2909

Accession

MI0013083

Description

Homo sapiens miR-2909 stem-loop

Stem-loop

--         -gc     -  -      ucuuu  c 
  gguguuagg   caaca uc ucuugg     cc c
  |||||||||   ||||| || ||||||     || u
  ccgcaauuc   guugu gg agaacc     gg g
ua         aac     c  u      ---cu  u 

Deep sequencing

1 reads, 1 experiments

Comments

This miRNA was referred to as hmiR-che-1 in [1].

Genome context

• Coordinates (GRCh37.p5): chr17: 35391042-35391110 [+]
• Overlapping transcripts:

  sense

  ENST00000225402 ; AATF-201; intron 11

  ENST00000225402 ; AATF-201; intron 11

  ENST00000225402 ; AATF-201; intron 11

Database links

• ENTREZGENE: 100422969;MIR2909

Mature sequence hsa-miR-2909

• Accession: MIMAT0013863
• Sequence: 4 - guuagggccaacaucucuugg - 24
• Evidence: experimental; qPCR [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-2909
  • MICRORNA.ORG:hsa-miR-2909
  • MIRDB:hsa-miR-2909
  • RNA22-HSA:hsa-miR-2909
  • TARGETMINER:hsa-miR-2909

References

1. "Cellular AATF gene encodes a novel miRNA that can contribute to HIV-1 latency" Kaul D, Hussain A Indian J. Biochem. Biophys. 46:237-240(2009).