Stem-loop sequence bta-mir-2904-3

Accession

MI0013082 (change log)

Description

Bos taurus miR-2904-3 stem-loop

Gene family

MIPF0000872; mir-2904

Literature search

5 open access papers mention bta-mir-2904-3
(7 sentences)

Stem-loop

        ag     -    ag cu   uu  cc    a 
5' acggc  cgccg cggg  c  cgg  gg  ucgg u
   |||||  ||||| ||||  |  |||  ||  ||||  
3' ugccg  gcggc gccc  g  gcc  cc  ggcc a
        -g     c    cu cc   --  cu    g 

Deep sequencing

12669 reads, 65.8 reads per million, 73 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr3: 53705747-53705816 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-2904-3

• bta-mir-2904-2: chr3: 53704423-53704492 [+]
• bta-mir-2904-3: chr3: 53705747-53705816 [+]
• bta-mir-2887-2: chr3: 53705860-53705916 [+]

Database links

• EntrezGene:MIR2904-3
• RNAcentral:URS000075A6BB_9913
• miRBase Tracker:MI0013082

Mature sequence bta-miR-2904

• Accession: MIMAT0013862
• Sequence: 14 - gggagccucgguuggccuc - 32
• Deep sequencing: 28275 reads, 71 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2904

References

1. PMID:19765282 "Identification and characterization of miRNAs expressed in the bovine ovary" Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D BMC Genomics. 10:443(2009).