Stem-loop sequence osa-MIR396d

Accession

MI0013049 (change log)

Description

Oryza sativa miR396d stem-loop

Gene family

MIPF0000882; MIR396_2

Literature search

55 open access papers mention osa-MIR396d
(138 sentences)

Stem-loop

   --uaca    g g    u       -g         a    --gg  g  gg   -  ug  g 
5'       gcga u guuc ggaaggc  guggaggug cggc    cg cc  cgc cg  gc g
         |||| | |||| |||||||  ||||||||| ||||    || ||  ||| ||  || g
3'       cguu g caag ucuuucg  caccuucgc gucg    gc gg  gug gc  cg g
   cgccgg    - g    u       ga         -    agca  g  gg   a  gu  g 

Deep sequencing

2132 reads, 1.3e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0013049

Mature sequence osa-miR396d

• Accession: MIMAT0013835
• Sequence: 91 - uccacaggcuuucuugaacgg - 111
• Deep sequencing: 1577 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000522131_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).