Stem-loop sequence osa-MIR2867

Accession

MI0013029 (change log)

Description

Oryza sativa miR2867 stem-loop

Literature search

1 open access papers mention osa-MIR2867
(1 sentences)

Stem-loop

   caau                       a   c a  a        g   caa 
5'     ugacggcgugugccaucccacac ucc g uc uggcgugu aca   c
       ||||||||||||||||||||||| ||| | || |||||||| |||    
3'     acuguuguacacgguagggugug agg c ag accgugcg ugu   u
   ----                       c   a c  c        -   agg 

Deep sequencing

69 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr11: 16277650-16277750 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013029

Mature sequence osa-miR2867-5p

• Accession: MIMAT0013814
• Previous IDs: osa-miR2867
• Sequence: 13 - ugugccaucccacacaucccga - 34
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002CF3A5_39947

Mature sequence osa-miR2867-3p

• Accession: MIMAT0020947
• Sequence: 72 - ccaggacgugugggauggca - 91
• Deep sequencing: 66 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002A5632_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).
2. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).