Stem-loop sequence ola-mir-430c-2

Accession

MI0013011 (change log)

Description

Oryzias latipes miR-430c-2 stem-loop

Gene family

MIPF0000003; mir-430

Literature search

3 open access papers mention ola-mir-430c-2
(9 sentences)

Stem-loop

     cg     uc    g          -a      g   -    u 
5' gu  gacau  agau accuuaacau  ggcacu acu ugaa u
   ||  |||||  |||| ||||||||||  |||||| ||| ||||  
3' cg  cugug  ucug ugggguugua  ucguga uga guuu u
     au     gu    a          ca      a   c    c 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (MEDAKA1)	Overlapping transcripts
4: 8194-8281 [+]	sense ENSORLT00000026146 ; exon 1 ENSORLT00000025953 ; exon 1
scaffold4154: 315-402 [-]	sense ENSORLT00000026146 ; exon 1 ENSORLT00000025953 ; exon 1

Clustered miRNAs

< 10kb from ola-mir-430c-2

• ola-mir-430a-1: 4: 6743-6824 [+]
• ola-mir-430c-1: 4: 6962-7047 [+]
• ola-mir-430b-1: 4: 7977-8058 [+]
• ola-mir-430c-2: 4: 8194-8281 [+]
• ola-mir-430c-3: 4: 13010-13098 [+]

Database links

• miRBase Tracker:MI0013011

Mature sequence ola-miR-430c

• Accession: MIMAT0013805
• Sequence: 53 - uaagugcuacauguugggguag - 74
• Evidence: experimental; in-situ [1], Northern [1]

References

1. PMID:19770025 "Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development" Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K Gene. 449:41-49(2010).