Stem-loop sequence bmo-mir-2851-1

Accession MI0012991
Description Bombyx mori miR-2851-1 stem-loop
Gene family MIPF0001014; mir-2851
Stem-loop 
--ugugauaa     g  cc   a         a c    -    gaaug 
          ucucu ua  aca ucaucaugc c cagu gaua     u
          ||||| ||  ||| ||||||||| | |||| ||||      
          agaga au  ugu aguagugug g guca cuau     u
gagaagauaa     g  ua   c         a a    a    acaca
Get sequence
Deep sequencing
9 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2176: 346140-346238 [+]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2851-1
bmo-mir-2733e-2 nscaf2176: 341036-341134 [-]
bmo-mir-2733e-1 nscaf2176: 341366-341463 [-]
bmo-mir-2733i nscaf2176: 343361-343468 [-]
bmo-mir-2733f nscaf2176: 344550-344667 [-]
bmo-mir-2733a-2 nscaf2176: 344959-345075 [-]
bmo-mir-2851-2 nscaf2176: 345032-345130 [+]
bmo-mir-2733a-3 nscaf2176: 345068-345215 [-]
bmo-mir-2733b-1 nscaf2176: 345409-345488 [-]
bmo-mir-2733h nscaf2176: 345532-345612 [-]
bmo-mir-2733b-2 nscaf2176: 345690-345818 [-]
bmo-mir-2851-1 nscaf2176: 346140-346238 [+]
bmo-mir-2733a-1 nscaf2176: 346147-346230 [-]
bmo-mir-2733g nscaf2176: 346317-346428 [-]
bmo-mir-2733c nscaf2176: 352194-352275 [-]
bmo-mir-9d nscaf2176: 353029-353113 [-]

Mature sequence bmo-miR-2851

Accession MIMAT0013783
Sequence

68 -  

ugugaugacuguauuagagaga

 - 89

Get sequence
Deep sequencing 44 reads, 3 experiments
Evidence not experimental

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).