Stem-loop sequence eca-mir-514

Accession MI0012978
Description Equus caballus miR-514 stem-loop
Gene family MIPF0000130; mir-506
Stem-loop 
uucuuuu   gg  cc      -     aa  g         aua 
       ugu  ua  cuacuc cagag  ug caaucaugu   a
       |||  ||  |||||| |||||  || |||||||||    
       acg  au  ggugag gucuc  ac guuagugua   c
-uucagu   ua  aa      u     -c  a         aau
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Genome context
Coordinates (EquCab2) Overlapping transcripts
X: 116793914-116794002 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-514
eca-mir-514 X: 116793914-116794002 [-]
eca-mir-509 X: 116788793-116788890 [-]
Database links
  • ENTREZGENE: 100315096;MIR514

Mature sequence eca-miR-514

Accession MIMAT0013234
Sequence

55 -  

auugacaccucugugagugga

 - 75

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).