Stem-loop sequence eca-mir-509

Accession MI0012977
Description Equus caballus miR-509 stem-loop
Gene family MIPF0000130; mir-506
Stem-loop 
----   ac   -     g   cc    -     ca   g       --g  u 
    cau  ugu gugug uac  uacu gcaga  gug caaucau   ua a
    |||  ||| ||||| |||  |||| |||||  ||| |||||||   ||  
    gua  aca uacac aug  guga cgucu  cac guuagua   au a
uaga   -c   g     a   au    a     -c   a       aaa  u
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Genome context
Coordinates (EquCab2) Overlapping transcripts
X: 116788793-116788890 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-509
eca-mir-514 X: 116793914-116794002 [-]
eca-mir-509 X: 116788793-116788890 [-]
Database links
  • ENTREZGENE: 100314954;MIR509

Mature sequence eca-miR-509-5p

Accession MIMAT0013233
Sequence

20 -  

uacugcagacaguggcaauca

 - 40

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).