Stem-loop sequence eca-mir-99a-2

Accession

MI0012929 (change log)

Description

Equus caballus miR-99a-2 stem-loop

Gene family

MIPF0000033; mir-10

Stem-loop

   cc          a         uc   u       u aag 
5'   cauuggcaua acccguaga  cga cuugugg g   u
     |||||||||| |||||||||  ||| ||||||| |    
3'   gugacugugu uggguaucu  gcu gaacacu c   g
   gu          c         uc   c       - cag 

Deep sequencing

41848 reads, 2.8e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr26: 15508980-15509060 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-99a-2

• eca-mir-99a-2: chr26: 15508980-15509060 [+]
• eca-let-7c: chr26: 15509722-15509792 [+]

Database links

• EntrezGene:MIR99A-2
• miRBase Tracker:MI0012929

Mature sequence eca-miR-99a

• Accession: MIMAT0013184
• Sequence: 13 - aacccguagauccgaucuugug - 34
• Deep sequencing: 41416 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).