Stem-loop sequence eca-mir-655

Accession MI0012914
Description Equus caballus miR-655 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
aacu   caag      ug           u      ua      cuuca 
    guu    gauauu  aggagagguua ccgugu  uguucg     u
    |||    ||||||  ||||||||||| ||||||  ||||||      
    cag    cuauaa  uuuucuccaau gguaca  auaagu     u
--cu   ---a      gu           u      ua      acuac
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42919594-42919690 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-655
eca-mir-376c 24: 42911104-42911169 [+]
eca-mir-376b 24: 42911856-42911937 [+]
eca-mir-376a 24: 42912234-42912301 [+]
eca-mir-1185 24: 42914351-42914436 [+]
eca-mir-381 24: 42916054-42916128 [+]
eca-mir-487b 24: 42916520-42916603 [+]
eca-mir-539 24: 42917365-42917442 [+]
eca-mir-889 24: 42917940-42918017 [+]
eca-mir-544-2 24: 42918692-42918781 [+]
eca-mir-655 24: 42919594-42919690 [+]
eca-mir-487a 24: 42921992-42922071 [+]
eca-mir-382 24: 42924862-42924937 [+]
eca-mir-134 24: 42925245-42925315 [+]
eca-mir-485 24: 42925986-42926058 [+]
Database links
  • ENTREZGENE: 100314918;MIR655

Mature sequence eca-miR-655

Accession MIMAT0013171
Sequence

61 -  

auaauacaugguuaaccucuuu

 - 82

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).