Stem-loop sequence eca-mir-539

Accession MI0012910
Description Equus caballus miR-539 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
     ug          a      c    ----u    uu 
auacu  aggagaaauu uccuug ugug     ucgc  u
|||||  |||||||||| |||||| ||||     ||||  a
uauga  uuuucuuuaa aggaac auac     agug  u
     gu          c      -    uaagu    uu
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42917365-42917442 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-539
eca-mir-376c 24: 42911104-42911169 [+]
eca-mir-376b 24: 42911856-42911937 [+]
eca-mir-376a 24: 42912234-42912301 [+]
eca-mir-1185 24: 42914351-42914436 [+]
eca-mir-381 24: 42916054-42916128 [+]
eca-mir-487b 24: 42916520-42916603 [+]
eca-mir-539 24: 42917365-42917442 [+]
eca-mir-889 24: 42917940-42918017 [+]
eca-mir-544-2 24: 42918692-42918781 [+]
eca-mir-655 24: 42919594-42919690 [+]
eca-mir-487a 24: 42921992-42922071 [+]
eca-mir-382 24: 42924862-42924937 [+]
eca-mir-134 24: 42925245-42925315 [+]
eca-mir-485 24: 42925986-42926058 [+]
Database links
  • ENTREZGENE: 100314916;MIR539

Mature sequence eca-miR-539

Accession MIMAT0013167
Sequence

9 -  

ggagaaauuauccuugcugugu

 - 30

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).