Stem-loop sequence eca-mir-485

Accession

MI0012903 (change log)

Description

Equus caballus miR-485 stem-loop

Gene family

MIPF0000201; mir-485

Stem-loop

      u         cu       -    a    auuc 
5' acu gaagagagg  ggccgug auga uucg    a
   ||| |||||||||  ||||||| |||| ||||    u
3' uga uuucucucc  ucggcac uacu gagc    c
      u         uc       a    -    gaaa 

Deep sequencing

265 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42925986-42926058 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-485

• eca-mir-381: chr24: 42916054-42916128 [+]
• eca-mir-487b: chr24: 42916520-42916603 [+]
• eca-mir-539: chr24: 42917365-42917442 [+]
• eca-mir-889: chr24: 42917940-42918017 [+]
• eca-mir-544-2: chr24: 42918692-42918781 [+]
• eca-mir-655: chr24: 42919594-42919690 [+]
• eca-mir-3959: chr24: 42921540-42921650 [+]
• eca-mir-487a: chr24: 42921992-42922071 [+]
• eca-mir-382: chr24: 42924862-42924937 [+]
• eca-mir-134: chr24: 42925245-42925315 [+]
• eca-mir-485: chr24: 42925986-42926058 [+]
• eca-mir-154a: chr24: 42930163-42930226 [+]
• eca-mir-154b: chr24: 42930413-42930553 [+]
• eca-mir-496: chr24: 42930990-42931092 [+]
• eca-mir-377: chr24: 42932739-42932807 [+]
• eca-mir-541: chr24: 42934714-42934797 [+]
• eca-mir-409: chr24: 42935634-42935712 [+]
• eca-mir-412: chr24: 42935784-42935863 [+]
• eca-mir-369: chr24: 42935933-42936002 [+]

Database links

• EntrezGene:MIR485
• miRBase Tracker:MI0012903

Mature sequence eca-miR-485-5p

• Accession: MIMAT0013159
• Sequence: 9 - agaggcuggccgugaugaauuc - 30
• Deep sequencing: 135 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-485-3p

• Accession: MIMAT0013160
• Sequence: 46 - gucauacacggcucuccucucu - 67
• Deep sequencing: 129 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).