Stem-loop sequence eca-mir-411

Accession MI0012898
Description Equus caballus miR-411 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
u      ug   a a    a      a a       - uuu 
 gguacu  gag g uagu gaccgu u gcguacg c   a
 ||||||  ||| | |||| |||||| | ||||||| |   u
 cuauga  cuc c auca cuggca a uguaugc g   c
a      --   c a    c      c a       a ugu
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42895895-42895976 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-411
eca-mir-379 24: 42894643-42894709 [+]
eca-mir-411 24: 42895895-42895976 [+]
eca-mir-299 24: 42896363-42896425 [+]
eca-mir-380 24: 42897592-42897652 [+]
eca-mir-1197 24: 42898113-42898232 [+]
eca-mir-323 24: 42898304-42898389 [+]
eca-mir-758 24: 42898599-42898683 [+]
eca-mir-329 24: 42899352-42899449 [+]
eca-mir-494 24: 42902171-42902251 [+]
eca-mir-1193 24: 42902577-42902697 [+]
eca-mir-543 24: 42904247-42904318 [+]
Database links
  • ENTREZGENE: 100314910;MIR411

Mature sequence eca-miR-411

Accession MIMAT0013154
Sequence

16 -  

uaguagaccguauagcguacg

 - 36

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).