Stem-loop sequence eca-mir-382

Accession MI0012895
Description Equus caballus miR-382 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
    u       -a           ug      - uuu 
uacu gaagaga  guuguucgugg  gauucg c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42924862-42924937 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-382
eca-mir-381 24: 42916054-42916128 [+]
eca-mir-487b 24: 42916520-42916603 [+]
eca-mir-539 24: 42917365-42917442 [+]
eca-mir-889 24: 42917940-42918017 [+]
eca-mir-544-2 24: 42918692-42918781 [+]
eca-mir-655 24: 42919594-42919690 [+]
eca-mir-487a 24: 42921992-42922071 [+]
eca-mir-382 24: 42924862-42924937 [+]
eca-mir-134 24: 42925245-42925315 [+]
eca-mir-485 24: 42925986-42926058 [+]
eca-mir-154 24: 42930163-42930226 [+]
eca-mir-496 24: 42930990-42931092 [+]
eca-mir-377 24: 42932739-42932807 [+]
eca-mir-541 24: 42934714-42934797 [+]
Database links
  • ENTREZGENE: 100314908;MIR382

Mature sequence eca-miR-382

Accession MIMAT0013150
Sequence

11 -  

gaaguuguucgugguggauucg

 - 32

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).