Stem-loop sequence eca-mir-381

Accession MI0012894
Description Equus caballus miR-381 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagu uc cuc aacgggaa cauauaag   cag u
      g  u   g        -        aua   u
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42916054-42916128 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-381
eca-mir-495 24: 42906084-42906165 [+]
eca-mir-376c 24: 42911104-42911169 [+]
eca-mir-376b 24: 42911856-42911937 [+]
eca-mir-376a 24: 42912234-42912301 [+]
eca-mir-1185 24: 42914351-42914436 [+]
eca-mir-381 24: 42916054-42916128 [+]
eca-mir-487b 24: 42916520-42916603 [+]
eca-mir-539 24: 42917365-42917442 [+]
eca-mir-889 24: 42917940-42918017 [+]
eca-mir-544-2 24: 42918692-42918781 [+]
eca-mir-655 24: 42919594-42919690 [+]
eca-mir-487a 24: 42921992-42922071 [+]
eca-mir-382 24: 42924862-42924937 [+]
eca-mir-134 24: 42925245-42925315 [+]
eca-mir-485 24: 42925986-42926058 [+]
Database links
  • ENTREZGENE: 100315080;MIR381

Mature sequence eca-miR-381

Accession MIMAT0013149
Sequence

49 -  

uauacaagggcaagcucucugu

 - 70

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).