Stem-loop sequence eca-mir-1185

Accession MI0012873
Description Equus caballus miR-1185 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
u       u    -     ga a              acu   u 
 uugguac ugaa gagag  u cccuuuguauguuc   uca u
 ||||||| |||| |||||  | ||||||||||||||   |||  
 aacuaug guuu uucuc  a gggggacauauaag   agu a
a       c    a     ag -              --c   a
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42914351-42914436 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-1185
eca-mir-495 24: 42906084-42906165 [+]
eca-mir-376c 24: 42911104-42911169 [+]
eca-mir-376b 24: 42911856-42911937 [+]
eca-mir-376a 24: 42912234-42912301 [+]
eca-mir-1185 24: 42914351-42914436 [+]
eca-mir-381 24: 42916054-42916128 [+]
eca-mir-487b 24: 42916520-42916603 [+]
eca-mir-539 24: 42917365-42917442 [+]
eca-mir-889 24: 42917940-42918017 [+]
eca-mir-544-2 24: 42918692-42918781 [+]
eca-mir-655 24: 42919594-42919690 [+]
eca-mir-487a 24: 42921992-42922071 [+]
Database links

Mature sequence eca-miR-1185

Accession MIMAT0013123
Sequence

15 -  

agaggauacccuuuguauguu

 - 35

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).