Stem-loop sequence eca-let-7d

Accession

MI0012859 (change log)

Description

Equus caballus let-7d stem-loop

Gene family

MIPF0000002; let-7

Literature search

5 open access papers mention eca-let-7d
(12 sentences)

Stem-loop

          a              c      -------uua      g 
5' ccuagga gagguaguagguug auaguu          gggcag g
   ||||||| |||||||||||||| ||||||          |||||| a
3' ggauucu uuccgucguccagc uaucaa          cccguu u
          -              a      uagaggaaca      u 

Deep sequencing

3410 reads, 200 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr23: 54148818-54148904 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-let-7d

• eca-let-7f: chr23: 54150758-54150844 [-]
• eca-let-7d: chr23: 54148818-54148904 [-]

Database links

• EntrezGene:MIRLET7D
• miRBase Tracker:MI0012859

Mature sequence eca-let-7d

• Accession: MIMAT0013110
• Sequence: 8 - agagguaguagguugcauaguu - 29
• Deep sequencing: 2912 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).