Stem-loop sequence eca-mir-125a

Accession

MI0012760 (change log)

Description

Equus caballus miR-125a stem-loop

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention eca-mir-125a
(1 sentences)

Stem-loop

    ug  uc  ug   c    ua        ----  a 
5' c  gg  cc  aga ccuu  accuguga    gg c
   |  ||  ||  ||| ||||  ||||||||    ||  
3' g  cc  gg  ucu ggag  uggacacu    cc a
    gu  ga  gu   u    --        ggga  u 

Deep sequencing

42807 reads, 2.95e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr10: 21371573-21371640 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-125a

• eca-mir-99b: chr10: 21370890-21370959 [+]
• eca-let-7e: chr10: 21371067-21371145 [+]
• eca-mir-125a: chr10: 21371573-21371640 [+]

Database links

• EntrezGene:MIR125A
• miRBase Tracker:MI0012760

Mature sequence eca-miR-125a-5p

• Accession: MIMAT0013008
• Sequence: 6 - ucccugagacccuuuaaccuguga - 29
• Deep sequencing: 42777 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-125a-3p

• Accession: MIMAT0013009
• Sequence: 44 - acaggugagguucuugggagcc - 65
• Deep sequencing: 30 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).