Stem-loop sequence eca-mir-200c

Accession

MI0012727 (change log)

Description

Equus caballus miR-200c stem-loop

Gene family

MIPF0000019; mir-8

Literature search

4 open access papers mention eca-mir-200c
(11 sentences)

Stem-loop

   -     -      a        u   u   gg 
5'  ccguc uuaccc gcaguguu ggg gcu  u
    ||||| |||||| |||||||| ||| |||  u
3'  gguag aauggg cgucauaa cuc uga  g
   a     u      c        u   -   gg 

Deep sequencing

2 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr6: 34423081-34423144 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000027401 ; eca-mir-200c-201; exon 1

Clustered miRNAs

< 10kb from eca-mir-200c

• eca-mir-200c: chr6: 34423081-34423144 [+]
• eca-mir-141: chr6: 34423490-34423561 [+]

Database links

• EntrezGene:MIR200C
• miRBase Tracker:MI0012727

Mature sequence eca-miR-200c

• Accession: MIMAT0012974
• Sequence: 42 - uaauacugccggguaaugaugga - 64
• Deep sequencing: 2 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).